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全世界有数十万份小麦种质资源保存在基因库中，且小麦新审定品种数量逐年增加。对小麦种质资源精准基因分型是解锁遗传多样性、加速品种改良的首要步骤。然而，现有的分子标记检测技术仍然具有检测通量低、成本偏高、技术复杂、敏感性偏低等问题。目前，仍缺乏面向育种应用的高通量、低成本的小麦种质材料的基因型鉴定技术。
《Archives of Virology》 期刊 —— Complete genome sequence of a novel partitivirus with a dsRNA3 segment, isolated from Fusarium commune strain CP-SX-3 causing strawberry root rot（图）
镰刀菌 真菌病毒 种类 多样性
2024/6/14
近日，辽宁省果树科学研究所植保课题赵雨萌实习研究员为第一作者，在《Archives of Virology》发表了题为《Complete genome sequence of a novel partitivirus with a dsRNA3 segment, isolated from Fusarium commune strain CP-SX-3 causing strawberry roo...
pssRNAit-a web server for designing effective and specific plant siRNAs with genome-wide off-target assessment
Bioinformatics plant RNAi siRNA efficacy off-target gene silencing VIGS syntasiRNA
2024/1/12
We report an advanced web server named pssRNAit (plant specific small non-coding RNAi tool) that can be used to design a pool of small interfering RNAs (siRNAs) for highly effective, specific, and non...
Unraveling the 3D Genome Architecture in Plants: Present and Future
3D genomic methods plant 3D genome dynamic chromatin organization liquid-liquid phase separation RNA-chromatin interaction
2023/12/19
The eukaryotic genome has a hierarchical three-dimensional organization with functional implications in DNA replication, DNA repair, and transcriptional regulation. Over the past decade, scientists ha...
Genome-wide analysis of the AREB/ABF gene lineage in land plants and functional analysis of TaABF3 in Arabidopsis
ABFs Land plants Phylogenetic relationship Expression analysis TaABFs Drought stress
2023/12/15
Previous studies have shown that ABFs (abscisic acid-responsive transcription factors) are important ABA-signaling components that participate in abiotic stress response. However, little is known abou...
Genome-wide analysis and expression profile of the bZIP gene family in poplar
Poplar bZIP gene family Tissue-differential expression Salt stress Co-expression analysis
2023/12/8
The bZIP gene family, which is widely present in plants, participates in varied biological processes including growth and development and stress responses. How do the genes regulate such biological pr...
MYB transcription factor family in sweet cherry (Prunus avium L.): genome-wide investigation, evolution, structure, characterization and expression patterns
MYB transcription factors PavMYB genes Phylogenetic analysis Expression pattern Dormancy
2023/11/30
MYB Transcription factors (TFs) are most imperative and largest gene family in plants, which participate in development, metabolism, defense, differentiation and stress response. The MYB TFs has been ...
Functional divergence of Populus MYB158 and MYB189 gene pair created by whole genome duplication
duplicate gene functional divergence MYB transcription factor regulatory networks secondary cell wall biosynthesis whole genome duplication
2023/11/28
Whole genome duplication (WGD) provides new genetic material for genome evolution. After a WGD event, some duplicates are lost, while other duplicates still persist and evolve diverse functions. A par...
Targeted introduction of heritable point mutations into the plant mitochondrial genome
plant mitochondrial genome heritable ALEN-GDM mtDNA genome editing CRISPR-Cas
2023/11/28
The development of technologies for the genetic manipulation of mitochondrial genomes remains a major challenge. Here we report a method for the targeted introduction of mutations into plant mitochond...
The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences
Adiantum capillus-veneris evolution of seed plants origin of euphyllophytes defences
2023/11/16
Euphyllophytes encompass almost all extant plants, including two sister clades, ferns and seed plants. Decoding genomes of ferns is the key to deep insight into the origin of euphyllophytes and the ev...
植物基因组学与新绿色革命论坛：Atypical disease resistance genes across the genome of wheat（2023.10.23日10:00）
植物基因组学 新绿色革命 麦类作物
2023/10/28
植物基因组学与新绿色革命论坛：Atypical disease resistance genes across the genome of wheat（2023.10.23日10:00）。
南京农业大学农学院《Molecular Plant》发表宋庆鑫教授课题组“A telomere-to-telomere gap-free assembly of soybean genome”（图）
宋庆鑫 基因 分子育种
2023/10/28
大豆是世界重要的粮油饲兼用作物，中国是全球最大的大豆消费国和进口国，2023年来大豆供需失衡成为我国农业的重大“卡脖子”问题。基于基因组信息，克隆和解析重要农艺性状关键调控基因对于培育高产优质大豆新品种至关重要。2010年，大豆品种Williams 82的基因组被破译，成为首个大豆参考基因组。随后该基因组被多次更新，已成为广泛应用的大豆参考基因组，极大推动了大豆重要农艺性状的解析和分子育种。然而，...
学术报告：IIIandMe: An Algorithm for Chromosome-scale Haplotype Determination Using Genome-wide Variants of Three Haploid Reproductive Cells
Algorithm Chromosome-scale Haplotype Determination
2023/7/20
贾震宇教授，本科就读于武汉大学生命科学学院生物化学专业。2006年于加州大学河滨分校同时取得统计学硕士和遗传-基因组-生物信息联合学科博士。先后就职于加州大学尔湾分校病理系、阿克伦大学统计系和俄亥俄西北医科大学医学系，从事包括前列腺癌在内的多种疾病的研究以及在生物统计和生物信息学科的教学工作。现受聘为加州大学河滨分校植物科学系数量遗传学教授。贾老师目前的研究工作包括基因组选择方法在作物育种和癌症预...
南京农业大学农学院《Molecular Plant》上发表王秀娥教授团队“A chromosome-scale genome assembly of Dasypyrum villosum provides insights into its application as a broad-spectrum disease resistance resource for wheat improvement”（图）
王秀娥 小麦遗传育种 基因 栽培
2023/10/28
2023年2月6日，南京农业大学农学院细胞遗传研究所作物遗传与种质创新国家重点实验室小麦遗传育种创新团队在《Molecular Plant》杂志上发表了题为“A chromosome-scale genome assembly of Dasypyrum villosum provides insights into its application as a broad-spectrum disea...
Genome-wide association mapping and gene expression analysis identify OsCPS1 as a new candidate gene controlling early seedling length in rice
rice shoot length genome-wide association study OsCPS1 selection
2023/4/21
High seedling vigor can improve the ability to compete against weeds and flooding at the seedling stage and is essential for the direct seeding of rice. Early shoot length is an important performance ...